Research Papers « Institute for Genomics and Systems Biology

Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap.

by Kevin White, Gandal MJ, Haney JR, Parikshak NN, Leppa V, Ramaswami G, Hartl C, Schork AJ, Appadurai V, Buil A, Werge TM, Liu C; CommonMind Consortium; PsychENCODE Consortium; iPSYCH-BROAD Working Group, Horvath S, Geschwind DH.

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PMID: 29439242

Conjunction of factors triggering waves of seasonal influenza

by Ishanu Chattopadhyay, Andrey Rzhetsky, Kiciman E, Elliott JW, Shaman JL

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PMID: 29485041

Algorithmic Bio-surveillance For Precise Spatio-temporal Prediction of Zoonotic Emergence

by Ishanu Chattopadhyay, Jaideep Dhanoa, Balaji Manicassamy

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Profiling Reactive Metabolites via Chemical Trapping and Targeted Mass Spectrometry

by Raymond Moellering, Chang JW, Lee G, Coukos JS.

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PMID: 27314642

Does the brain listen to the gut?

by Jack Gilbert, Kuntz T

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PMID: 27223601

(Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans

by Jack Gilbert, Sharma A, Lal R.

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PMID: 27151933

A robust adaptive denoising framework for real-time artifact removal in scalp EEG measurements

by Robert Grossman, Kilicarslan A, Contreras-Vidal JL.

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PMID: 26863159

Imputing Gene Expression in Uncollected Tissues Within and Beyond GTEx

by Barbara Stranger, Wang J, Gamazon ER, Pierce BL, Im HK, Gibbons RD, Cox NJ, Nicolae DL, Chen LS.

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PMID: 27040689

Small Rad51 and Dmc1 Complexes Often Co-occupy Both Ends of a Meiotic DNA Double Strand Break

by Michael Rust, Brown MS, Grubb J, Zhang A, Bishop DK.

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PMID: 26719980

Controlling the Cyanobacterial Clock by Synthetically Rewiring Metabolism

by Michael Rust, Pattanayak GK, Lambert G, Bernat K.

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PMID: 26686627

Choosing experiments to accelerate collective discovery

by Andrey Rzhetsky, Foster JG, Foster IT, Evans JA.

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PMID: 26554009

The transcriptional landscape of age in human peripheral blood

by Barbara Stranger, Peters MJ, Joehanes R, Pilling LC, Schurmann C, Conneely KN, Powell J, Reinmaa E, Sutphin GL, Zhernakova A, Schramm K, Wilson YA, Kobes S, Tukiainen T.

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PMID: 26490707

Digital signaling decouples activation probability and population heterogeneity

by Savas Tay, Kellogg RA, Tian C, Lipniacki T, and Quake SR

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PMID: 26488364

Expression Quantitative Trait Loci Information Improves Predictive Modeling of Disease Relevance of Non-Coding Genetic Variation

by Barbara Stranger, Croteau-Chonka DC, Rogers AJ, Raj T, McGeachie MJ, Qiu W, Ziniti JP, Stubbs BJ, Liang L, Martinez FD, Strunk RC, Lemanske RF, Liu AH, Carey VJ, Raby BA.

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PMID: 26474488

Computational Recipes in Enzymology

by Michael Rust

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PMID: 27135910

The impact of human copy number variation on gene expression

by Barbara Stranger, Gamazon ER.

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PMID: 25922366

The microbe-mediated mechanisms affecting topsoil carbon stock in Tibetan grasslands

by Jack Gilbert, Yue H, Wang M, Wang S, Sun X, Wu L, Lin Q, Hu Y, Li X, He Z, Zhou J, Yang Y.

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PMID: 25689025

Key metabolic pathways involved in xenobiotic biotransformation and stress responses revealed by transcriptomics of the mangrove oyster Crassostrea brasiliana

by Jack Gilbert, Lüchmann KH, Clark MS, Bainy AC, Craft JA, Chipman JK, Thorne MA, Mattos JJ, Siebert MN, and Schroeder DC.

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PMID: 26186662

Health ROI as a measure of misalignment of biomedical needs and resources

by Andrey Rzhetsky, Yao L, Li Y, Ghosh S, Evans JA.

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PMID: 26252133

Hospital-associated microbiota and implications for nosocomial infections

by Jack Gilbert, Lax S

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PMID: 25907678

Circadian rhythms: A protein fold switch joins the circadian oscillator to clock output in cyanobacteria

by Michael Rust, Connie Phong, Chang YG, Cohen SE, Myers WK, Kim YI, Tseng R, Lin J, Zhang L, Boyd JS, Lee Y, Kang S, Lee D, Li S, Britt RD, Golden SS, LiWang A.

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PMID: 26113641

Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci

by Barbara Stranger, Trynka G, Westra HJ, Slowikowski K, Hu X, Xu H, Klein RJ, Han B, Raychaudhuri S.

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PMID: 26140449

The ocean sampling day consortium

by Jack Gilbert, The ocean sampling day consortium

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PMID: 26097697

Athletic equipment microbiota are shaped by interactions with human skin

by Jack Gilbert, Wood M, Gibbons SM, Lax S, Eshoo-Anton TW, Owens SM, Kennedy S, and Hampton-Marcell JT.

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PMID: 26113975

Human HLA-G+ extravillous trophoblasts: Immune-activating cells that interact with decidual leukocytes

by Barbara Stranger, Tilburgs T, Crespo ÂC, van der Zwan A, Rybalov B, Raj T, Gardner L, Moffett A, Strominger JL.

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PMID: 26015573

Accurate and fast multiple-testing correction in eQTL studies

by Barbara Stranger, Sul JH, Raj T, de Jong S, de Bakker PI, Raychaudhuri S, Ophoff RA, Eskin E, Han B.

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PMID: 26027500

Whole genome resequencing of experimental populations reveals polygenic basis of egg size variation in Drosophila melanogaster

by Aashish Jha, Kevin White, Martin Kreitman, Christopher Brown, Miles CM, Lippert NR

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PMID: 26044351

Lifestyle evolution in cyanobacterial symbionts of sponges

by Jack Gilbert, Burgsdorf I, Slaby BM, Handley KM, Haber M, Blom J, Marshall CW, Hentschel U, Steindler L

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PMID: 26037118

The role of the commensal microbiota in the regulation of tolerance to dietary allergens

by Jack Gilbert, Berni Canani R, and Nagler CR

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PMID: 25827065

Using corticosteroids to reshape the gut microbiome: implications for inflammatory bowel diseases

by Jack Gilbert, Huang EY, Inoue T, Leone VA, Dalal S, Touw K, Wang Y, Musch MW, Theriault B, Higuchi K, Donovan S, Chang EB.

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PMID: 25738379

Nfkb1 is a haploinsufficient DNA damage-specific tumor suppressor

by Kevin White, Megan McNerney, Voce DJ, Schmitt AM, Uppal A, Bernal GM, Cahill KE, Wahlstrom JS, Nassiri A, Yu X, Crawley CD, Onel K, Weichselbaum RR, Yamini B

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PMID: 25043302

Automated co-culture system for spatiotemporal analysis of cell-to-cell communication

by Savas Tay, Frank T

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PMID: 25892510

Potential contribution of anammox to nitrogen loss from paddy soils in Southern China

by Jack Gilbert, Yang XR, Li H, Nie SA, Su JQ, Weng BS, Zhu GB, Yao HY, Zhu YG

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PMID: 25416768

Metagenomes from two microbial consortia associated with Santa Barbara seep oil

by Jack Gilbert, Hawley ER, Malfatti SA, Pagani I, Huntemann M, Chen A, Foster B, Copeland A, Del Rio TG, Pati A, Jansson JR, Tringe SG, Lorenson TD, Hess M

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PMID: 24958360

Our unique microbial identity

by Jack Gilbert

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PMID: 25971745

Forensic analysis of the microbiome of phones and shoes

by Jack Gilbert, Lax S, Hampton-Marcell JT, Gibbons SM, Colares GB, Smith D, Eisen JA

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PMID: 25969737

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data

by Kevin White, Ian T. Foster, Yuan Ji, Zhu Y, Xu Y, Helseth DL Jr, Gulukota K, Yang S, Pesce LL, Mitra R, Müller P, Sengupta S, Guo W, Silverstein JC, Parsad N

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PMID: 25956356

Collagen degradation and MMP9 activation by Enterococcus faecalis contribute to intestinal anastomotic leak

by Jack Gilbert, Shogan BD, Belogortseva N, Luong PM, Zaborin A, Lax S, Bethel C, Ward M, Muldoon JP, Singer M, An G, Umanskiy K, Konda V, Shakhsheer B, Luo J, Klabbers R, Hancock LE, Gilbert J, Zaborina O, and Alverdy JC

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PMID: 25947163

Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes

by Andrey Rzhetsky, Melamed RD, Emmett KJ, Madubata C, Rabadan R.

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PMID: 25926297

The soil microbiome influences grapevine-associated microbiota

by Jack Gilbert, Zarraonaindia I, Owens SM, Weisenhorn P, West K, Hampton-Marcell J, Lax S, Bokulich NA, Mills DA, Martin G, Taghavi S, van der Lelie D

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PMID: 25805735

Towards large-cohort comparative studies to define the factors influencing the gut microbial community structure of ASD patients

by Jack Gilbert, McDonald D, Hornig M, Lozupone C, Debelius J, Knight R.

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PMID: 25758371

Spatial and temporal variations in indoor environmental conditions, human occupancy, and operational characteristics in a new hospital building

by Jack Gilbert, Tiffanie Ramos,Brent Stephens, Sandra Dedesko, Jeffrey A. Siegel.

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PMID: 25729898

Our interface with the built environment: immunity and the indoor microbiota

by Jack Gilbert, Lax S, Nagler CR.

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PMID: 25754179

ImmVar project: Insights and design considerations for future studies of "healthy" immune variation

by Barbara Stranger, De Jager PL, Hacohen N, Mathis D, Regev A, Benoist C.

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PMID: 25819567

Noise facilitates transcriptional control under dynamic inputs

by Savas Tay, Kellogg RA

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PMID: 25635454

Satellite remote sensing data can be used to model marine microbial metabolite turnover

by Jack Gilbert, Larsen PE, Scott N, Post AF, Field D, Knight R, Hamada Y

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PMID: 25072414

Rare occurrence of EGFRvIII deletion in head and neck squamous cell carcinoma

by Kevin White, Everett E. Vokes, Khattri A, Zuo Z, Brägelmann J, Keck MK, El Dinali M, Brown CD, Stricker T, Munagala A, Cohen EE, Lingen MW, Seiwert TY

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PMID: 25255959

A novel mechanism of inherited TBG deficiency: mutation in a liver-specific enhancer

by Kevin White, Ferrara AM, Pappa T, Fu J, Brown CD, Peterson A, Moeller LC, Wyne K, Pluzhnikov A, Trubetskoy V, Nobrega M, Weiss RE,Dumitrescu AM, Refetoff S

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PMID: 25361180

Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets

by Robert Grossman, Kevin White, Allison Heath, Chaitanya Bandlamudi, Jonathan Spring, Matthew Greenway, Megan McNerney, David Hanley, Powell R, Suarez R,

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PMID: 24464852

Life in a World without Microbes

by Jack Gilbert, Neufeld JD

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PMID: 25513890

Integrative analysis of head and neck cancer identifies two biologically distinct HPV and three non-HPV subtypes

by Kevin White, Everett E. Vokes, Keck MK, Zuo Z, Khattri A, Stricker TP, Brown CD, Imanguli M, Rieke D, Endhardt K, Fang P, Brägelmann J, DeBoer R, El-Dinali M,Aktolga S, Lei Z, Tan P, Rozen SG, Salgia R, Weichselbaum RR, Lingen MW, Story MD, Ang KK, Cohen EE, Seiwert TY

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PMID: 25492084

Data smashing: uncovering lurking order in data

by Ishanu Chattopadhyay, Lipson, H

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Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways

by Jack Gilbert, Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Lal R.

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PMID: 25418849

Widespread genetic epistasis among cancer genes

by Kevin White, Megan McNerney, Wang X, Fu AQ

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PMID: 25407795

The complete genome sequence for putative H₂- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome

by Dionysios Antonopoulos, Folker Meyer, Jack Gilbert, Handley KM, Bartels D, O'Loughlin EJ, Williams KH, Trimble WL, Skinner K, Desai N, Glass EM, Paczian T, Wilke A, Kemner KM

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PMID: 24628880

Pri peptides are mediators of ecdysone for the temporal control of development

by Kevin White, Rebecca Spokony, Chanut-Delalande H, Hashimoto Y, Pelissier-Monier A, Dib A, Kondo T, Bohère J, Niimi K, Latapie Y, Inagaki S, Dubois L, Valenti P, Polesello C, Kobayashi S, Moussian B, Plaza S, Kageyama Y, Payre F

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PMID: 25344753

Towards understanding cell penetration by stapled peptides

by Raymond Moellering, Qian Chu, Gerard J. Hilinski, Young-Woo Kim, Tom N. Grossmann, Johannes T.-H. Yeh, Gregory L. Verdine

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Su(H)-mediated repression positions gene boundaries along the dorsal-ventral axis of Drosophila embryos

by Kevin White, Lijia Ma, Ozdemir A, Stathopoulos A.

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PMID: 25313963

Transcription Factor Networks In Drosophila Melanogaster

by Kevin White, Rhee DY, Cho DY, Zhai B, Slattery M, Ma L, Mintseris J, Wong CY, White KP, Celniker SE, Przytycka TM, Gygi SP, Obar RA, Artavanis-Tsakonas S.

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PMID: 25242320

Mixtures of opposing phosphorylations within hexamers precisely time feedback in the cyanobacterial circadian clock

by Michael Rust, Jenny Lin, Chew J, Chockanathan U

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PMID: 25197081

Intersection of population variation and autoimmunity genetics in human T cell activation

by Barbara Stranger, Ye CJ, Feng T, Kwon HK, Raj T, Wilson MT, Asinovski N, McCabe C, Lee MH, Frohlich I, Paik HI, Zaitlen N, Hacohen N, De Jager P, Mathis D, Regev A, Benoist C.

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PMID: 25214635

Intersection of population variation and autoimmunity genetics in human T cell activation

by Barbara Stranger, Ye CJ, Feng T, Kwon HK, Raj T, Wilson MT, Asinovski N, McCabe C, Lee MH, Frohlich I, Paik HI, Zaitlen N, Hacohen N, De Jager P, Mathis D, Regev A, Benoist C.

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PMID: 25214635

Fractional anisotropy asymmetry and the side of seizure origin for partial onset-temporal lobe epilepsy

by Robert Grossman, Li H, Xue Z, Dulay MF Jr, Verma A, Karmonik C, Wong ST.

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PMID: 25037096

Longitudinal analysis of microbial interaction between humans and the indoor environment

by Jack Gilbert, Sean Gibbons, Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK,Vázquez-Baeza Y, Van Treuren W, Hasan NA, Gibson MK, Colwell R, Dantas G, Knight R

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PMID: 25170151

Comparative Analysis of Regulatory Information and Circuits Across Distant Species

by Kevin White, Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, Ma L, Niu W, Rehm EJ, Rozowsky J, Slattery M, Spokony R, Terrell R, Vafeados D, Wang D, Weisdepp P, Wu YC, Xie D, Yan KK, Feingold EA, Good PJ, Pazin MJ, Huang H, Bickel PJ, Brenner SE, Reinke V, Waterston RH, Gerstein M, White KP, Kellis M, Snyder M.

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PMID: 25164757

Commensal Bacteria Protect Against Food Allergen Sensitization

by Dionysios Antonopoulos, Andrew T. Stefkaa, Taylor Feehleya, Prabhanshu Tripathia, Ju Qiub, Kathy McCoyc, Sarkis K. Mazmaniand, Melissa Y. Tjotae, Goo-Young Seoa, Severine Caoa, Betty R. Theriaultf, Liang Zhoub, Eugene B. Change, Yang-Xin Fua, and Cathryn R. Nagler

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Rhythms in Energy Storage Control the Ability of the Cyanobacterial Circadian Clock to Reset

by Michael Rust, Gopal Pattanayak, Connie Phong

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Yorkie promotes transcription by recruiting a histone methyltransferase complex

by Kevin White, Oh H, Slattery M, Ma L, Mann RS, Irvine KD

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PMID: 25017066

Integrative and comparative genomic analysis of HPV-positive and HPV-negative head and neck squamous cell carcinomas

by Kevin White, Everett E. Vokes, Seiwert TY, Zuo Z, Keck MK, Khattri A, Pedamallu CS, Stricker T, Brown C, Pugh TJ, Stojanov P, Cho J,Lawrence MS, Getz G, Brägelmann J, DeBoer R, Weichselbaum RR, Langerman A, Portugal L, Blair E, Stenson K, Lingen MW, Cohen EE, Hammerman PS.

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PMID: 25056374

Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change.

by Kevin White, Martinez C, Rest JS, Kim AR, Ludwig M, Kreitman M, White K, Reinitz J.

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PMID: 24408913

SPOP promotes tumorigenesis by acting as a key regulatory hub in kidney cancer.

by Kevin White, Li G, Ci W, Karmakar S, Chen K, Dhar R, Fan Z, Guo Z, Zhang J, Ke Y, Wang L, Zhuang M, Hu S, Li X, Zhou L, Li X, Calabrese MF, Watson ER, Prasad SM, Rinker-Schaeffer C, Eggener SE, Stricker T, Tian Y, Schulman BA, Liu J, White KP.

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PMID: 24656772

Low grade prostate cancer diverges early from high grade and metastatic disease.

by Kevin White, VanderWeele DJ, Brown CD, Taxy JB, Gillard M, Hatcher DM, Tom WR, Stadler WM, White KP.

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PMID: 24890684

The spectrum of somatic mutations in high-risk acute myeloid leukaemia with -7/del(7q).

by Kevin White, McNerney ME, Brown CD, Peterson AL, Banerjee M, Larson RA, Anastasi J, Le Beau MM, White KP.

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PMID: 24931631

Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification.

by Kevin White, Arthur RK, Ma L, Slattery M, Spokony RF, Ostapenko A, Nègre N, White KP.

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PMID: 24985914

Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes.

by Barbara Stranger, Raj T, Rothamel K, Mostafavi S, Ye C, Lee MN, Replogle JM, Feng T, Lee M, Asinovski N, Frohlich I, Imboywa S, Von Korff A, Okada Y, Patsopoulos NA, Davis S, McCabe C, Paik HI, Srivastava GP, Raychaudhuri S, Hafler DA, Koller D, Regev A, Hacohen N, Mathis D, Benoist C, Stranger BE, De Jager PL.

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PMID: 24786080

Regulation of Gene Expression in Autoimmune Disease Loci and the Genetic Basis of Proliferation in CD4+ Effector Memory T Cells.

by Barbara Stranger, Hu X, Kim H, Raj T, Brennan PJ, Trynka G, Teslovich N, Slowikowski K, Chen WM, Onengut S, Baecher-Allan C, De Jager PL, Rich SS, Stranger BE, Brenner MB, Raychaudhuri S.

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PMID: 24968232

Genomics of alternative splicing: evolution, development and pathophysiology.

by Barbara Stranger, Gamazon ER, Stranger BE.

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PMID: 24378600

Expression QTL-based analyses reveal candidate causal genes and loci across five tumor types.

by Barbara Stranger, Li Q, Stram A, Chen C, Kar S, Gayther S, Pharoah P, Haiman C, Stranger B, Kraft P, Freedman ML.

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PMID: 24907074

DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections.

by Andrey Rzhetsky, Liu CC, Tseng YT, Li W, Wu CY, Mayzus I, Rzhetsky A, Sun F, Waterman M, Chen JJ, Chaudhary PM, Loscalzo J, Crandall E, Zhou XJ.

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PMID: 24895436

Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster.

by Robert Grossman, Rebecca Spokony, Rob Arthur, Matt Slattery, Lijia Ma, Alec Victorsen, Jason Grundstad, Wenxuan Gao, Jennifer Moran, Edward (Jay) Rehm, Kevin White, Kheradpour P, Kundaje A, Nègre N, Crofts A, Ptashkin R, Zieba J, Ostapenko A, Suchy S, Jameel N, Kellis M.

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PMID: 24985916

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill.

by Jack Gilbert, Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, Knight R, Gilbert JA, Jansson JK.

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PMID: 24451203

Human and environmental impacts on river sediment microbial communities.

by Jack Gilbert, Gibbons SM, Jones E, Bearquiver A, Blackwolf F, Roundstone W, Scott N, Hooker J, Madsen R, Coleman ML, Gilbert JA.

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PMID: 24841417

Understanding cultivar-specificity and soil determinants of the cannabis microbiome.

by Jack Gilbert, Hawley ER, Malfatti SA, Pagani I, Huntemann M, Chen A, Foster B, Copeland A, Del Rio TG, Pati A, Jansson JR, Gilbert JA, Tringe SG, Lorenson TD, Hess M.

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PMID: 24932479

Metagenomes from two microbial consortia associated with Santa Barbara seep oil.

by Jack Gilbert, Hawley ER, Malfatti SA, Pagani I, Huntemann M, Chen A, Foster B, Copeland A, Del Rio TG, Pati A, Jansson JR, Gilbert JA, Tringe SG, Lorenson TD, Hess M.

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PMID: 24958360

Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity.

by Jack Gilbert, Parfrey LW, Walters WA, Lauber CL, Clemente JC, Berg-Lyons D, Teiling C, Kodira C, Mohiuddin M, Brunelle J, Driscoll M, Fierer N, Knight R.

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PMID: 24995004

The complete genome sequence for putative H2 - and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome.

by Dionysios Antonopoulos, Handley KM, Bartels D, O'Loughlin EJ, Williams KH, Trimble WL, Skinner K, Gilbert JA, Desai N, Glass EM, Paczian T, Wilke A, Kemner KM, Meyer F.

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PMID: 24628880

High-throughput microfluidic single-cell analysis pipeline for studies of signaling dynamics

by Savas Tay, Kellogg RA, Gómez-Sjöberg R, and Leyrat AA

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PMID: 24967621

Regulation of gene expression in autoimmune disease loci and the genetic basis of proliferation in CD4+ effector memory T cells

by Barbara Stranger, Hu X, Kim H, Raj T, Brennan PJ, Trynka G, Teslovich N, Slowikowski K, Chen WM, Onengut S, Baecher-Allan C, De Jager PL, Rich SS, Brenner MB, Raychaudhuri S.

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PMID: 24968232

Immunocytochemical localization of epidermal growth factor-receptor in early embryos of the Japanese medaka fish (Oryzias latipes

by Heather Scott, Boomsma RA1, Scott H, Walters K.

PMID: 11352399

Express primer generator tool for high throughput gene cloning and expression.

by Heather Scott, Scott HN1, Laible PD, Hanson DK.

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PMID: 12826060

Sequences of versatile broad-host-range vectors of the RK2 family.

by Heather Scott, Scott HN1, Laible PD, Hanson DK.

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PMID: 12826060

Towards higher-throughput membrane protein production for structural genomics initiatives.

by Heather Scott, Laible PD1, Scott HN, Henry L, Hanson DK.

PMID: 15263855

Loss of the death receptor CD95 (Fas) expression by dendritic cells protects from a chronic viral infection

by Aly Azeem Khan, Vineeth Varanasi, Alexander V. Chervonskya

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Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points.

by Jack Gilbert, Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF.

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PMID: 24674078

The Gut of Geographically Disparate Ciona intestinalis Harbors a Core Microbiota.

by Jack Gilbert, Dishaw LJ, Flores-Torres J, Lax S, Gemayel K, Leigh B, Melillo D, Mueller MG, Natale L, Zucchetti I, De Santis R, Pinto MR, Litman GW, Gilbert JA.

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PMID: 24695540

Current developments in arbuscular mycorrhizal fungi research and its role in salinity stress alleviation: a biotechnological perspective.

by Jack Gilbert, Kumar A, Dames JF, Gupta A, Sharma S, Gilbert JA, Ahmad P.

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PMID: 24708070

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments.

by Jack Gilbert, Scott NM, Hess M, Bouskill NJ, Mason OU, Jansson JK, Gilbert JA

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PMID: 24723913

Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects.

by Dionysios Antonopoulos, Huse SM, Young VB, Morrison HG, Antonopoulos DA, Kwon J, Dalal S, Arrieta R, Hubert NA, Shen L, Vineis JH, Koval JC, Sogin ML, Chang EB, Raffals LE.

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PMID: 24529162

Exercise prevents weight gain and alters the gut microbiota in a mouse model of high fat diet-induced obesity.

by Dionysios Antonopoulos, Evans CC, Lepard KJ, Kwak JW, Stancukas MC, Laskowski S, Dougherty J, Moulton L, Glawe A, Wang Y, Leone V, Antonopoulos DA, Smith D, Chang EB, Ciancio MJ.

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PMID: 24670791

Hydroxymethylation at gene regulatory regions directs stem/early progenitor cell commitment during erythropoiesis.

by Robert Grossman, Madzo J, Liu H, Rodriguez A, Vasanthakumar A, Sundaravel S, Caces DB, Looney TJ, Zhang L, Lepore JB, Macrae T, Duszynski R, Shih AH, Song CX, Yu M, Yu Y, Grossman R, Raumann B, Verma A, He C, Levine RL, Lavelle D, Lahn BT, Wickrema A, Godley LA.

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PMID: 24373966

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